Mopra User's Manual (MUM)

Never forget your MUM!


by Lucyna Kedziora-Chudzer
Michael Murphy
Jill Rathborne
Jung-Kyu Lee


Last updated 28/08/02


Contents

1  About This Manual
    1.1  How to Use this Manual
    1.2  General stuff
    1.3  Support Astronomer
    1.4  Observer
2  Site Overview 1 - Antenna
    2.1  Hard Hats
    2.2  `Mushrooms'
    2.3  Keys
    2.4  Pedestal Room
        2.4.1  Antenna Control Computer (ACC)
        2.4.2  Turret Control
        2.4.3  Subreflector Control
        2.4.4  SWEO Drives power supply
        2.4.5  UPS
    2.5  Platform
    2.6  Vertex Room
3  Site Overview 2 - Control Room
    3.1  Computing Facilities
        3.1.1  Important directories
    3.2  Network access for external laptop computers
    3.3  Correlator Room
4  Startup Procedure
    4.1  Quick boot guide
    4.2  Booting the ACC
    4.3  Login to MOPRA and camon
    4.4  Talking to the ACC: sda, cain
    4.5  Talking to the LO Conversion Chain: mmlo_setup
    4.6  Preparing to tune the receivers: mmdrive
    4.7  Attenuation Test - GTP
    4.8  Assistance
    4.9  Setting the correlators: mpcor
    4.10  To Display Spectra: spd
    4.11  Telescope Control System: tcs
5  Before Observing
    5.1  Observing Log
    5.2  Frequency Tuning
    5.3  Changing the bandpass
    5.4  Changing the integration time
    5.5  Pointing Correction
        5.5.1  Running the Pointing Correction test
        5.5.2  Finding the Correction
    5.6  Atmospheric Calibration
    5.7  Antenna Efficiency
6  Observing
    6.1  Creating an Observing Schedule
    6.2  Observing Technique
7  Quick Data Reduction: SPC and the SPeCT GUI
8  Data Management and Backup
    8.1  Essentials
    8.2  What do I back up?
    8.3  Exabyte tapes
    8.4  CD Writer
        8.4.1  Archiving of Mopra Data
9  Shutdown Procedure
A  Pointing Sources at Mopra - SiO Masers
B  Trouble Shooting
    B.1  Emergency lights in Control Room/Office switch on
    B.2  High pitched alarm
    B.3  Not-so-high-pitched alarm
    B.4  Communication to telescope is lost (1) - ``array_timeout'' at cain
    B.5  Communication to telescope is lost (2) - Error messages at `mmlo_setup'
    B.6  Shutting down and Rebooting the VAX
    B.7  Low diskspace on VAX
    B.8  a_test failure
    B.9  Reset Correlator Requested on TCS GUI or controller
    B.10  Observing after a VLBI run: things to check
    B.11  Assistance errors
        B.11.1  PCweather software not running, please restart
        B.11.2  drive errors
    B.12  Mopra Dead: old timestamp
    B.13  Loss of Tuner
    B.14  Bandpass looks wrong in spd display:
    B.15  ``Ch A IF out of range?'':
    B.16  Too many windows?:
    B.17  Time out when waiting for T_sys to change:
    B.18  Can't get a phase lock while tuning the receivers
        B.18.1  Tuning hints
        B.18.2  Checking the tuning
    B.19  Drive Error:
C  Mopra Manuals available on site
    C.1  Safety Manual
    C.2  Antenna Control Computer Manual
    C.3  Mopra User's Guide (MUG)
    C.4  Mopra 3mm SIS Rx Information Manual
    C.5  MM-wave Calibration Manual
D  Logs
E  ftping
F  Flux Calibration
    F.1  Calibration
    F.2  Skydips
G  Extras
    G.1  Attenuation test - GTP
    G.2  Setting the correlators
    G.3  Atmospheric Calibration
        G.3.1  Skydip
        G.3.2  Using GTP values

Chapter 1
About This Manual

There are various manuals on site scattered here and there in bits and pieces. This is the first attempt to put these together to provide more organized introduction for support (and visiting) astronomers in running the telescope.

A copy of this manual is placed in the control room, although even that is probably not the latest version. The latest version can be accessed (and downloaded) from the following web sites:

UNSW: http://newt.phys.unsw.edu.au/astro/mopra
ATNF: http://www.narrabri.atnf.csiro.au/mopra/mopra_home.html

The person in charge of the UNSW mm observing program is Lucyna Kedziora-Chudczer (). Contact her if you have any equiries about mm observations at Mopra. If you have any suggestions for this manual contact Cormac Purcell ().

1.1  How to Use this Manual

This manual is mainly designed for the support astromers, but it is also very useful for visiting astronomers. On arrival, please read through Chap. 1 for general information at site, especially about safety precautions and procedures and contact people. If you want to avoid the technical bits, you can skip Chap. 2. Make yourself familiar with the computer system in Chap.3 though before move onto the following chapters.

1.2  General stuff

Safety Manual: Visitors are requested to read the Safety Manual in the red folder (in the control room) on arrival. Make yourself familiar with fire alarms and fire extinguishers. A red `HELP' button on most telephones on the site is to activate the alarm (not for help information!). The `Cancel' button next to it is to cancel a false alarm.

Smoke Detectors: The local smoke detector in the Lounge/Kitchen area is really sensitive. Even burning toast sets it off. Don't panic, just open the doors and windows. The main smoke detectors in the kitchen are usually deactivated when people are on site.

Alarm Pendant: If you are working alone, wear the white `work-alone' alarm pendant and press the button in an emergency. There is one hanging on the fire alarm in the Control Room and there is a spare one in the drawer of the PC desk in the office (see Figure 2.1). This alarm, equivalent to the 'HELP' alarm on the phones will be picked up by the nearby hospital, and a doctor 'on-call'. There are two phones with the `help' button, one in the control room and one in the kitchen. There is also a dial box with 'help' button placed in the lower vertex room of the antenna (fig 1.1).

Figure 1.1: A dial `help' box in the lower vertex room.

Telephones: To redirect a phone call from where it is ringing to where you are, just pick up the handset and press No. 1 twice. To call out of the ATNF internal directory, dial ``0'' before your phone number.

Water: At Mopra, all water supply comes from rainwater tanks. It is probably the cleanest water you're likely to come across any time soon. Do not waste it. Keep this in mind when washing up or going for a ``long, hot shower'' on those cold and frosty mornings.

Food: Please don't eat any of the food in the Lounge/Kitchen area that isn't yours - it might well be someone's last morsel.

Table 1.1: Useful Phone Numbers
Mopra Control Room 6849 1801
Office 6849 1806
Office (Fax) 6849 1888
Kitchen 6849 1803
Pedestal Room 6849 1807
Vertex Room 6849 1808
Lucyna Office (02) 9385 5470
Mobile 0425 228614
Narrabri Duty Person on call (see control room whiteboard)
Narrabri Control Room 6790 4033
Robina Home 6842 2615
Mobile 0146 14 951

1.3  Support Astronomer

A support astronomer will be there to help visiting observers during the three month mm season (July 15 - October 15). Their job is to:

1.4  Observer

The Support Astronomer will show you how to create schedule files, where to put them and how to observe with Mopra. However, it is the observers' responsibility to design and run the observation itself. The source list, as well as a standard source list, should be provided with source position, frequency and expected intensity (for a standard source). The observer should also have some idea of what bandpass and spectral resulution (i.e. what configuration of the correlator) they want to use and how much time they want to spend on each source and on each reference position.

Chapter 2
Site Overview 1 - Antenna

A diagram of the general layout of the Mopra site is shown in Figure 2.1. Note the positions of all fire extinguishers and stop buttons (mushrooms). You should identify all the major components of this diagram when you first arrive on site.

Figure 2.1: The general layout of the Mopra site. Note the positions of all the fire extinguishers and emergency buttons (mushrooms). The mushrooms are located as shown: on the railing near each wheel of the antenna and on the steps leading up to the pedestal level. The main antenna is surrounded by a zone (dotted line) in which no cars should be parked and no one should be standing when the antenna is moving. If you must stand in this area while work is going on, wear a hard hat.

2.1  Hard Hats

Although we understand the dangers most people will subject themselves to in order not to look like one of the Village People, we must state that wearing a hard hat is compulsory when working out near the antenna. Having said that, it is up to each individual to wear one. Most people do not but they do so at their own risk. Remember, it is not cool to be dead and so you must weigh this up with the uncoolness of the Village People look - politics, not astronomy. Hard hats are available in the Lounge/Kitchen (usually on top of the cupboards). Remember, astronomers never look any good anyway, unless of course they're support astronomers!

2.2  `Mushrooms'

There are emergency buttons (called `mushrooms' by all the cool people on site) for the antenna drives along all the railings on the antenna and along the base of it.

There are two types of mushrooms: one to stop the antenna from moving and one to disable turret rotation.

You should depress a mushroom on your way onto the antenna so that you don't get killed while there in case someone decides to move the telescope when you don't want them to. If you go back to the control room and try to move the antenna and nothing happens (except a beep), then it is most likely that a mushroom is depressed somewhere - go and find it and give it a lift. Also, camon or MAPS (see Figure 2.1) in the Correlator room will tell you if a mushroom is active. A list of the mushrooms is available in the safety manual (red folder in control room).

There are also lights on the antenna which you should turn on at night should you be climbing on it. Don't leave them on though! There are optical telescopes (and astronomers, eeyyywww!) up the hill and they need their precious night-time darkness.

2.3  Keys

Your support astronomer will have keys to let you in to the lodge and control building. You need a key to move up to antenna platform and above. This is kept in Pedestral Room. The door to platform is very hard to open, and if you don't want to break your fingers, do not just turn the key but give it a slight push.

2.4  Pedestal Room

This room contains the Antenna Control Computer (ACC), the Turret and Subreflector controls, the Uninteruptable Power Supply (UPS) as well as the power supplies for the antenna drives. It also contains spare keys to the lodge and control room on the hooks on the table to your right as you enter. A schematic diagram of the layout is shown in Figure 2.2.

Figure 2.2: A sketch of the Pedestal Room

2.4.1  Antenna Control Computer (ACC)

This is usually controlled remotely both from the Control Room and from the Vertex Room, but if it is necessary to control it manually, then you need to move the knob on the ACC panel from ``Control Building'' to `` Pedestal''. This will cause the computer on the table opposite the ACC panel (Figure 2.3) to start up. At the prompt type
> loca
> dron
This will turn the drives for the antenna on (if there are no mushrooms depressed). To move to a particular coordinate type
> goto 0,0,75.00,85.00
where the first two numbers (0 and 0) specify type of wrap (North or South) and the coordinate system (Azimuth and Elevation in this case). These values can be changed so that the target position can be given in RA and Dec, see Appendix C.2). Numbers 75.00 and 85.00 referto the azimuth and elevation respectively. The commands ``stow'' and ``park'' can also be used. These drive the antenna to an azimuth of 75.00 in both cases with an elevation of 85.00 and 89.90 respectively. To return the system back to the remote mode, type
> drof
> remo
to turn the drives off, and return the knob back to ``Control room'' on the ACC panel.

Some other useful commands, which display system status:

> show hw
> show sv
> show co

where `hw' stands for hardware, `sv' for servo and `co' are coordinates, and stop will obviously stop the antenna. Note that all ACC-commands are 4-letter words. The use of other 4-letter words in the Control room is at the discretion of the support astronomer.

Figure 2.3: A view of the Antenna Control System

2.4.2  Turret Control

There are three receivers in the Vertex Room of the Antenna, all sitting on a rotatable turret. By rotating the turret, you can change the receiver. You should not change the turret position (i.e. swivel it to change receiver) from here. When the turret rotates it may squash someone against one of the walls with one of the receivers - try not to do that to the receivers please, they are expensive! You can control the turret position from the control room (i.e. remotely). However, be warned that the turret rotates much more quickly when controlled remotely - Make sure there is NO ONE in the telescope when you rotate the turret. In order to move the turret using a_test, it is necessary that:

Although the turret rotation is done within a_test you can't believe the information on page 5 as to the current receiver on axis (``Rec stat''). This gives the value ``KQ'' (which is the mm reciever) even when it is not on axis. To check which receiver is on axis, the best thing to do is go up to the vertex room and actually look. If you are too lazy to do this, then you can check the /turret page in camon. Turret position 2 is the mm receiver (position 3 is the ``CX'' receiver which is often used by VLBI observers). If this is indeed the receiver on axis, then the status should read ``TRUE'' (``FALS'' for those not on axis). If you find that the mm receiver is not an axis then you need to move the turret, make absolutely 100% sure there is no one on the telescope before doing this!. In a_test type;
> receiver `KQ'
> turret
This should swivel the turret and you should see the values in camon change within a minute. If it doesn't then wait another few minutes and ONLY THEN go and check. Make 100% sure that you depress as many mushrooms as cross your path on the way to checking the turret. Remember that MUM always said mushrooms were good for you!

The important rule is that the observers are not allowed to touch the manual control of the turret unless specifically instructed by the AT person to do so. Also the antenna gate must be left open when someone is above the pedestal level, so the antenna drives are disabled. This ensures that the antenna cannot be accidently driven when there is someone in the vertex room.

2.4.3  Subreflector Control

The position of the subreflector determines the focus, which can only be controlled from the Subreflector Control Panel (Figure 2.4).

Figure 2.4: Subreflector Control Panel in the Pedestal room

The ``loc'' (specifying local control) light should always be lit. It is very important to check that the subreflector is in the correct position. The number displayed on this panel should be checked and changed if necessary every time receiver is changed. There is a table of subreflector position numbers for each frequency in the control room (on the small whiteboard). The current setting for the 3mm observations is 11.3. To change the position of the subreflector, make sure that the step rate is set at `half' and the `enable' button has been pressed. Choose whether you want to move the subreflector `up' or `down' and then you need to simply hit the `run' button until you are at the desired position number. Remember to turn `enable' off when finished.

Below the subreflector drive controls is the pedestal room power supply readout. You may need to check the voltages and amperages if something goes wrong.

2.4.4  SWEO Drives power supply

This is the big grey box in front and to the right of you as you enter the room, marked with the big ``DANGER'' sticker. This is a high voltage area (550V DC). Under no circumstances open this box. This box contains many fuses for various antenna control systems. These fuses can be exchanged by a qualified electrician only!

2.4.5  UPS

The UPS is situated at the far corner of the room as you enter. The display should read ``UPS on line - normal''. If you press the `ALARM' button you can scroll through the last two day's history to check for the last alarm. If the UPS is being used the display should read `` Discharging''. The UPS can be used for up to 2 hours on the batteries stored beside it. Do not touch the battery box - very high voltages.

If there is a problem with the UPS then MAPS (see Chapter 4) will show a warning: either a primary or secondary failure will occur. In both circumstances it is best to call the support person at Narrabri (see Table 1.1). A secondary failure usually indicates that the UPS is beginning to run out of power. A primary fault indicates that the UPS is just about to go down. If you get a secondary warning, it is likely that the generator has not come on - try to start the generator and call a support person. If you get a primary failure, call a support person quickly - your main aim is to get power to the cryogenics.

2.5  Platform

The door on the lower level (access from the Pedestal room level) is a safety door - if it is left open the turret cannot be moved. When there are people climbing on the antenna, leave this door open for safety. A tip for opening the door: the door is very sticky. Give it a push while turning the key anti-clockwise.

The platform contains the compressors (labeled COMP1 & COMP2) for the cryogenic systems. If MAPS issues a warning, then it may be necessary to come up to the platform to check they are still working. It is very important to make sure that the cryogenics are working, especially if it looks like the power might go down (i.e. during a storm). To see if the compressors are still working, look and listen. Listen: if you try talking out loud with your head really close to one of the compressors and you can't hear yourself then you know that that particular compressor is working. Look: there are four pressure gauges. A Narrabri technician might ask you to read those values in an emergency.

In addition there are also the manual stowing drives on this level, used to stow the antenna in bad weather if the normal drives have failed. These are not often used. If you think you might have to use the manual stow drive then ring someone first (if you haven't already done so) - there is something wrong with the drives and it is better to get that sorted out quickly after stowing.

2.6  Vertex Room

Figure 2.5: A schematic diagram of the Vertex Room(1) when the mm receiver is chosen. `Turret Control Panel' is also shown at the bottom left. The shaded circle is a `mushroom'.

The turret is situated in this room. Note that this room has two halves - the detectors are mounted on top of the turret, while the electronics for them are mounted below. The central piece on both these levels rotates when the turret is moving. Under no circumstances should there be anyone in either half of the Vertex room when the turret is being moved remotely. It can also be done manually with a great deal of care. The Turret Control Panel is attached on your left as you enter the Vertex Room (Figure 2.5). If the manual option is used to move the turret, then it is best to either keep the switch at manual or keep the door on the lower (Pedestal Room) level open. This will prevent the computer from moving the turret back to the previous position when the switch is returned to the automatic position. The turret moves very quickly when controlled remotely. You don't want this to happen while you are in either Vertex Room!

There are three things that need to be checked in this room, depending on the type of observing that is required (either mm or VLBI).

After changing these cables and before moving the turret, make sure that there are no free hanging cables that could get in the way when the turret is moved. Always check the pointing after the turret has been moved.

Chapter 3
Site Overview 2 - Control Room

This chapter does not need that much detail as you will become very familiar with the control room in a very short time. The general layout and names of the computers in the control room are shown in Figure 3.1. Here is a description of each computer and its function. Note that most of these computers have a specific use and so using them for other more general things (eg. surfing the internet ... I mean, writing papers) is not recommended. We provide a list of useful directories for each computer in Table 3.1.1.

Figure 3.1: A schematic diagram of the Control Room.

3.1  Computing Facilities

There is an important computer which is relevant to operations in the control room which is not kept in the control room itself.

3.1.1  Important directories

Table 3.1.1 shows some important/useful directories on the computers in the control room (also on MPCCC). This serves as a useful quick-look guide while observing.

Computer Directory Description
Mopra mopra$dkb100:[obs.rpfits] Data storage area
obs$0:[multi.sched] Schedule files
obs$0:[multi.point] Pointing summary files
obs$:[point.skydip] Skydip results and summary files
obs$:[point.run] Skydip postscript files
obs$:[point.work] Preferred to run Skydip
Warrum /data/WARRUM_1 & WARRUM_2 Small data disks
~ /data Soft link to mopra data area
/c/observer Observer home area
/c/observer/CAT Object catalogues
MINOS ~ /data Soft link to mopra data area
currently not working
/c/observer Observer home area
MPCCC /data/MPCCC_1/corr/dat Data storage area
Table 3.1: Important directories in MOPRA, WARRUM, MINOS and MPCCC.

3.2  Network access for external laptop computers

There are several spare network ports available in the control room located on WARRUM. WARRUM runs a DHCP (Dynamic Host Configuration Protocol) server and so external computers (typically laptops) can be hooked up to the ATNF network quite easily. We won't go into the details here but the first step is to send an email to John Giovannis () containing the following information: You will need to configure the network parameters of your PC so that it uses DHCP to obtain an IP address. Any problems should be addressed to John Giovannis.

3.3  Correlator Room

The correlator room is located behind the control room and the front rack can be seen through glass panels while sitting in the control room (see figure 2.1). A diagram of the correlator room is shown in figure 3.2. Several important ``black-boxes'' reside in this room and these are listed below with a description of what you ``need to know'' about each of them.

Figure 3.2: A schematic diagram of the Correlator Room.

Figure 3.6: Air conditioning unit - ATLAS. Your support astronomer shows the alarm mute button.

Chapter 4
Startup Procedure

The following describes the complete startup procedure for the computer systems. Is is worth doing this at least a couple of times so that you understand how the various systems talk to each other. You might need to redo only small sections of the startup procedure during your observing run when the connections to various system go down or become confused. It is cruical when doing this that the various commands are executed in the correct order.

4.1  Quick boot guide

This is a summary of the procedures for starting up the software for the semi-experienced support astronomer (Table 4.1). The details of each step are given in the following sections.

Table 4.1: The quick boot guide for the experienced!
Log onto MOPRA (WARRUM and MMDRIVE should already be booted)
In a MOPRA DECterm execute the following commands and give appropriate answers:
sda starts the array program; should start automatically
camon this should automatically begin when you log on
cain make sure integration time is 10 s (or whatever you intended,
otherwise you have to set it within the program); must report ``Success'' for all
antennae, if not try again
mmlo_setup check reports and if there is some problem, try again
mmdrive check reports ® tune receivers on MMDRIVE
MMDRIVE PC start up tuning program on PC if it is not running already
In another DECterm on MOPRA execute the following:
a_test necessary to change atten and pointing offsets
to check the initial values, use camon pages /mopra and /pp
assistance
On three separate MPCCC terminals (create on WARRUM) execute the following;
mpcor the mpcor GUI should pop up
spd the pgplot window will pop up
cd /data/MPCCC_1/corr/dat (for checking progress of data)
On another MOPRA DECterm run;
tcs Make sure it connects successfully with the mpcor GUI
On a WARRUM xterm run;
tcs Open the GUI in expert mode

4.2  Booting the ACC

It is worth booting the ACC at the start of an observing run or when the timing between the ACC and GPS is a bit out. If the ACC needs to be rebooted, go to the MAPS (middle of front rack B - see Figure 3.2) panel in the correlator room. Flick the `` reset ACC'' (in the ``control from Narrabri'' column) switch to the far left, keeping it there for 40 seconds. The switch should then be returned to the far right position and the display on the ACC should then reset and the time should be ticking (if not then repeat the above sequence). To bring up co-ordinate information on the ACC, type ``show co''. To view the hardware status (i.e. drives for Az and El) then type ``show hw''.

4.3  Login to MOPRA and camon

Login to MOPRA as `observer' (the password will be given on arrival). As you login, a window entitled `camon' will automatically pop up showing you the telescope status (`camon' stands for Compact Array MONitor, as the system was originally written for the Compact Array). Important numbers to check are gated total power (GTP) for Channel A and B, which is the mean value of the input power to the receiver within the correlator bandwidth. It should always read between 0 and 5, preferably around 2.

There are two different ways to call the DECterm windows to run the tasks described below. Several of these have links set up under the Session Manager so that you may start them by simply selecting the task from a list. This will bring up a DECterm window in which the task has been automatically started. There are several tasks for which these are not set up, in these cases you will need to bring up a normal MOPRA DECterm window and start the task yourself. Since you will have several DECterm windows displayed as you set up, not all being needed at the same time, you may want to label and iconize them. You can do this under `Options' by choosing `Window' and changing `Window Title' and `Icon Title'. It is best to do this as you bring each of the windows up.

If you find necessary to open one of the Mopra DECterms on the console of another computer (eg. Warrum), you should create a new DECterm on Mopra and type in it:

set display/create/node=warrum/transport=tcpip

create/term=decterm/detach

It is also useful to know a few commands in camon to help you diagnose problems later on:

4.4  Talking to the ACC: sda, cain

Your first job is to re-link the ACC with all the components of the antenna system. After you log in the array task which controls the antenna should start automatically. Assistance program will complain (provided you started it by typing `assist' in one of the MOPRA DECterms) if array is not running. In that case in a DECterm type
$ sda
Or alternatively choose an `sda' window from the Session Manager. This will take a few minutes to complete its operation. In the meantime, about the only thing you can do is to initialize the integration clocks in the correlator system. In a free DECterm, type
$ cain
this is where you can change the integration time. Check the current integration cycle parameters (these should be on the display) and if these aren't what you want then hit ``c'' and alter them as required. If these values are ok, then reply with an ``i'' and then ``y''. Make sure that ``success'' was reported for all antennae, if not you need to re-run cain.

4.5  Talking to the LO Conversion Chain: mmlo_setup

In another free DECterm, type
$ mmlo_setup
to open communication to the LO conversion chain in the Vertex Room, so that the LO chain can be controlled by the MMDRIVE PC later on.

Usually, you will choose option ``3'' since you will want one channel (channel B) to be at the SiO maser frequency and the other channel (Channel A) to be at your source frequency. However, for brevity, we will pretend you have chosen option ``1'' - both channels at the same frequency. The questions asked otherwise will be similar. Choose ``n'' for the Doppler shift correction (the Telescope Control System ( tcs) will handle this later) and choose your bandwidth, say 64 MHz. All of these options can be changed later in tcs so don't panic if you choose the wrong ones. It is best to first get on a bright source and get a signal before the user wants to start observing. Do some pointing exercises (see Section 5.5) or something to build up your confidence in the system.

4.6  Preparing to tune the receivers: mmdrive

Grab a new DECterm and type
$ mmdrive
which will set up the Marconi systems for controlling the mm-wave components of the antenna. Check the diagnostics as they flash up. If there are any problems then you might need to call someone or go out and figure out what is wrong. You should be able to tell if it is serious from what the computer tells you. Rename this DECterm and iconize it (don't exit it, just iconize it!). Once this is up and running it is possible to begin tuning the mm-receiver on the MMDRIVE PC (see Section 5.2), for simplicity it is best to bring up all the systems before doing this.

4.7  Attenuation Test - GTP

Occasionally you may find that the attenuation levels are too low or too high. The GTP values and associated sampler statistics are highlighted in camon. You can adjust the attenuators to some level by going into a_test and selecting page 4 in this program
> 4
Next you should specify the level of fine attenuation:
> fine '4343'
To activate the change type:
> atten
This action sets attenuators on channel A to 4, and on channel B to 3. Two other numbers are not relevant to Mopra. (They were inherited together with this software from the ATCA.) This should (after several seconds) change the attenuation and GTP values displayed in the camon page. More information about attenuation and GTP values can be found in Appendix G.1.

4.8  Assistance

Quit out of a_test by typing
$ exit
Now type
$ assistance This brings up 3 panels of information: the emptier the lower two, the better off you are. assistance simply monitors the telescope workings and sounds a small alarm if there is a problem. You should keep assistance running throughout your observations and should listen out for it's little beeps in case something goes wrong. Solutions to problems reported by assistance should be reported to the authors of this manual so that we can add them into the Troubleshooting section (see Appendix B).

4.9  Setting the correlators: mpcor

Open an xterm on WARRUM, set the xhost to include MPCCC (xhost +mpccc) and ssh to MPCCC:
> ssh -l corr mpccc
The password will be given to you by the support astronomer. Then set the display to the WARRUM screen using
> setenv DISPLAY warrum:0.0
Once this is done you should then open two xterms from the MPCCC window:
> xterm &
In one of these MPCCC xterms you can open communication with the Mopra correlators by typing
> mpcor
Several things should happen when you do this. Several windows will open up but will immediately iconize themselves. Most importantly, the mpcor GUI will pop up. The GUI displays information about the configuration of the correlator (i.e. bandpass, number of channels etc.), integration cycle, name of the current data file and diagnostic information about the correlator activity. It is handy during observations for changing the configuration file and for checking whether or not a file is open. A snapshot of the mpcor GUI is shown in Figure 4.1.

There are a few programs running in the background when you start mpcor. If the mpcor crashes for some reason, these programs have to be killed, to be able to restart the correlator. The detailed procedure is described in the Appendix B.



Figure 4.1: The interactive mpcor GUI window on WARRUM.



4.10  To Display Spectra: spd

In another of your MPCCC xterms type
> spd
to begin the spectra display software with a pgplot window.

The commands below are the ones you will need to ...
> select 1 2 View both polarizations
> a View the amplitude of the signal
> a y1 y2 Change the display range of y-axis
> save Save a reference signal
> d -10 80 View the difference between the source signal and the reference signal
(and set the plot range to -10 to 80)
> x change the x-label to channel number from frequency
> chan x1 x2 change the display range of channel number

4.11  Telescope Control System: tcs

In yet another new MOPRA DECterm type
$ tcs
which will start the telescope control system ( tcs) controller. Keep this window open. It is now time to start the tcs GUI on WARRUM. In an empty WARRUM xterm type
> tcs
you will see a window pop up that has two options highlighted. These two should be ``MOPRA'' and ``Recover last exit state''. Make sure these options are marked with a red circle before hitting `ok'. You should also enter the ``expert mode''. This allows you to insert the ``hot load'' or ``paddle'' from the tcs window. Hitting ``ok'' will bring up the interactive tcs window, where the observing will be controlled - see Figure 4.2).

You will get very used to using the tcs but Table 4.2 summarizes the main features. This table also serves as a quick-look guide to those things you might have to change when setting up for an observation. Chapter 5 has more details on observing with tcs.

Table 4.2: Setting up in the tcs GUI window
OBSERVATION ID These fields are reasonably self explanatory.
ANTENNA CONTROL
Source name Find a standard source either from the Standard or Own source.
file or by typing the coordinates in.
Duration The value of this parameter is just an arbitrarily large integer,
usually 500.
CORRELATOR
Configuration Check that this is consistent with the LOCAL OSCILLATOR
configuration.
Averaging Number of cycles averaged to save in a file.
LOCAL OSCILLATOR Set the bandwidth, and number of channels you want
(consistent with the configuration file). Also type
in the desired frequencies for channel A and B.
ACTION PANEL
Sched Load the relevant schedule file.
Repeat This is the number of times the schedule file is
repeated per integration.
SYSTEM STATUS
Antenna Clicking on this button allows you to disable the antenna
(select ``disable'') at which point if the antenna is stowed you can
continue to ``track' (i.e. data will be coming in) if you need to check
anything in the vertex room for instance.



Figure 4.3: The interactive tcs GUI window on WARRUM.



Figure 4.4: The interactive tcs GUI window on WARRUM.

Chapter 5
Before Observing

5.1  Observing Log

At the moment, there is a rather primitive (but reliable) log system. There is the MOPRA Log Book lying on the desk in the control room with stacks of information about each time an integration is made. Whether you are doing a skydip, a SiO pointing or a real observation, you HAVE TO RECORD RELEVANT INFORMATION IN THE LOG BOOK. There is also an electronic logging program called moplog and instructions for its use are given in Appendix D. moplog can also be used to make hard copies of the observing log - please staple or paste these hard copies into the log book.

It is also a VERY GOOD IDEA to make a copy of the relevant pages of the log book for your own use when reducing data. moplog can be used to make electronic copies which tend to be harder to lose.

See also Appendix D about Logs.

5.2  Frequency Tuning

Now, you are almost ready to begin taking some data ... almost! The most important (and time consuming) part of setting up the system is tuning the receivers. This is done on the MMDRIVE PC. There is extensive documentation on the methods for doing this (``3mm RECEIVER: BASIC TUNING REQUIREMENTS'' see Appendix C.4), follow these notes through to obtain frequency tuning. Most of the molecular lines in the system have preset tuning values for all the LO chain and mixer voltages. Just ``Set LO frequency'', make sure all the drives are on, and press ``Auto Preset''. You should not have to tune much after this to get phase lock and good side band rejection.

Tuning on any other frequency is somewhat of a black art - try not to leave any torn shreds of hair lying about. The basic idea is to maximize (i.e. least negative) the power reading on the power meter on top of the CRO while keeping maximum side band rejection. But this won't mean much until you've tried it out.

When weather is good, the paddle in/out gives 2 - 2.5 dB difference in power reading for Channel A and ~ 3.5 dB for Channel B. If not, tuning needs refinement.

5.3  Changing the bandpass

There is a little trick involved with changing the bandwidth that you want to observe with and it is essential that you perform this little trick properly. To this end I will use an example so that the language I use doesn't get to convoluted. Let's say that you have set up the system and you have the configuration file ``AC_64_1024_2'' running. That is, you have a 64 MHz bandwidth and you're using 1024 channels (both of which define your spectral resolution). You are also using both channel A and B. Right, we've got that straight. But what if you want to change your configuration to, say, 256 MHz bandwidth, 1024 channels with still the A and B channels running? Well, here are some steps to follow when you do this.

  1. The first and most superficial thing to do is to change the values of these parameters on the TCS GUI screen. Make sure the number of channels in A and B is still 1024 and change the bandwidth to 256  MHz.

  2. Change the configuration file to ``AC_256_1024_2''. This is done by pressing the present configuration file in the TCS window and choosing the one you want from the menu. If the configuration file you want isn't in the presets then just type the name of it in, press ``Enter'' and hope that it is loaded into the TCS (it tells you if it is in text readout window). The configuration file is important but the other changes (in (1)) only make sure the correct values go in the header.

  3. Here is the most tricky stage (well ... it isn't tricky at all but you must remember to do it). You have to change the number of bits used to sample to data. This has to be done in a_test by changing the variable called ``nbits'' (funnily enough). So, go to a_test and type
    > nbits = `1111'
    > sets
    and that should do it. Other values are given in Table 5.1

  4. The last step is to make sure the correlators are properly configured for the new configuration. Go to the mpcor GUI window, select the correct config file in the top right hand corner and then press ``Update'' and ``Config'' afterwards. This should do the trick.

Table 5.1 shows some information for each configuration.

Table 5.1: The different correlator configurations and their corresponding spectral resolutions
# Channels
Bandwidth /MHz256 512 1024
64 nbits = `4444' nbits = `4444' nbits = `4444'
Dv=0.75 kms-1Dv=0.38 kms-1Dv=0.19 kms-1
128 nbits = `2222' nbits = `2222' nbits = `2222'
Dv=1.5 kms-1Dv=0.75 kms-1Dv=0.38 kms-1
256 nbits = `1111' nbits = `1111' nbits = `1111'
Dv=3.0 kms-1Dv=1.5 kms-1Dv=0.75 kms-1

5.4  Changing the integration time

Most observing is done through the use of schedule files loaded from MOPRA into the TCS window. Each schedule file is divided into a number of units - each unit usually corresponds to a different antenna position. Within a unit, there may be several integration cycles specified. Each cycle lasts the length of the integration time which is set in ``cain'' on MOPRA. To change the integration time go to your ``cain'' window and start up ``cain'' (by typing ``cain''). The first option is ``C'' - change integration time. Press ``C'' and then follow the prompts to change the integration time. Make sure you choose ``y'' when asked if you want to initialize the configuration (last question). Make sure that ``Antenna 1'' has ``Success'' printed after it. If not then repeat the above step with a smaller integration time. Then repeat with the correct integration time. If this doesn't work then iterate a few times until you get ``Success''.
The standard integration time is 10 seconds. It is not advisable to use an integration time shorter than 8 seconds, which is a minimum required for the Antenna Control Computer to run a number of antenna monitoring tasks during each integration cycle.

5.5  Pointing Correction

The antenna's pointing changes with elevation and azimuth. A pointing solution can be found by observing strong SiO maser sources at different ALT, AZ and time. You should do a pointing correction before each set of observations. If you are doing a long integration on one object then make sure you stop integrating intermittently to do a pointing correction or two. At Mopra, we usually do a pointing every 2 hours.

5.5.1  Running the Pointing Correction test

When the tcs GUI is first booted on WARRUM, make sure that any previous file is closed by clicking ``Close file'' on the bottom left of the tcs window. The procedure for running the pointing check is summarized below.

  1. Select a SiO maser source - this can be done from the Antenna Control menu of tcs (through `Source name', then `Browse catalogue'). There is also a SiO maser source list in Appendix A.

  2. Goto - this button moves the telescope to the position of the selected source. Check that the GTP for channel B is in the right range.

  3. Load the schedule file - this is done manually by typing the name of the file into the little window, the schedule file for a pointing test is e.g. PNT.SCH. The schedule file is then loaded by hitting the `load schedule' button.

    If you pointing source is very strong, you can save some time by trimming number of intergration cycles in each scan. The pointing schedule: point_sio.sch uses 5 cycles, while point_test3 uses only 3 cycles. Three cycles seems to be a reliable minimum number.

    At this point it is important to check that both the channels of the local oscillator are active and that the frequency of Channel A is correct (e.g. at 115.2 GHz for the CO line) and Channel B is at 86.243 GHz (SiO maser frequency).

  4. Retune Channel B to 86.243 GHz (SiO maser frequency) if you observed your target frequency with both channels.

  5. Start Schedule - This will start taking data with a beep and whistle. After a short time, the new filename will show in the mpcor window, record this in the log.

  6. Look at incoming data - Wait until the first `Percentage completed' - this will indicate when the reference position is recorded. In the spd window, type `save' to save this continuum spectrum, then use the `d' command to look at the SiO lines as they come in. There will be one reference position (for pnt.sch file the reference is +15¢ away in dec) and then 5 positions about the source (on-source, -dec, +dec, -ra, +ra, with each offset by 20¢¢).

  7. Close file - to save it on disk, when the ``SYSTEM STATUS'' is ``IDLE''.

5.5.2  Finding the Correction

Next you have to transfer your pointing file to Mopra from MPCCC. This is done by the ftp script: moput. Type:

moput <filename>

on the MPCCC window. (We hope to avoid this step in the near future.)

In the same DEC term (MOPRA) that you usually run a_test in, type
$ sio_point
to run the pointing test analysis program.

You will be asked to give an input filename, enter the file name of the most current run through the pointing test. sio_point will then show you a plot of the 5 spectra and give you the pointing offsets in azimuth (dfx) and elevation (dfz). You can either < accept > , < recompute > or < quit > them. Type `accept' to accept them, or just hit < CR > to quit. For the former, fx and fz change accordingly, which you should check in the camon window to make sure these values are corrected since it sometimes fails to do so. When this happens, or you simply want to do it yourself, go to a_test (page 2) and type the following:
$ fx -154
$ fz -72
$ setp
Check the camon window here as well to make sure these values are correct. No correction is needed for fx or fz if the offsets are < 5". Keep these values in the log together with the time, azimuth and elevation of your measurement..

When these adjustments have been made you may want to re-run the pointing schedule file (steps 4-6 above) to check if the model worked. If there are more adjustments made, remember to add these new pointing corrections into the pointing log. This process should be repeated until you are happy with the pointing, that is, when the offsets are small and the first spectra displayed (i.e. the on-source position) has a large emission, compared with the emission in the offset frames, all of which should be approximately the same.

To save the output spectra of sio_point as a postscript file, run it again and choose the device /ps for a postscript in landscape mode, or /vps for portrait mode.
$ laser < filename.ps >
will send it to the printer (or ftp it to WARRUM or MINOS and psnup it! - see Appendix E).

5.6  Atmospheric Calibration

Previously, atmospheric calibration was achieved by regularly performing skydips. When this version of MUM was compiled, there was no need to do skydips due to the installation of automatic attenuation/GTP software. Currently we run skydips together with scans of the planets to check the long term system stability. There is a special folder to keep the plots of your skydip measurements. They are also useful to monitor diurnal and positional changes in atmospheric opacity at the Mopra site.

Some schedule files now include a ``mm_tsys'' command at the beginning. For those that don't, or if you just want to measure the Tsys then type ``mm_tsys'' in the tcs GUI control command window (at the bottom). This automatically calculates the system temperature by adjusting the attenuators and putting the paddle in or out. The whole procedure takes about 2 minutes to complete, so you may choose to calculate the so-called Y-factor instead, and to convert it to the system temperature next. Remember to record the system temperature in the log book. More details about the atmospheric calibration are provided in Appendix G.

The system temperature should be measured every 1.5-2 hours, and perhaps more often if observing at lower elevations or in unstable weather.

5.7  Antenna Efficiency

Occasionally you will be asked to measure antenna efficiency. We are in the process of estimating this for different frequencies within the 3 mm bandwidth. The following procedure is used to do this.